- Savior (Ghost Note Symphonies) prod. by Andrew Berlin, Bill Stevenson, Chris Beeble & Jason Livermore
- Savior (Nowhere Sessions)
- Savior (Simlish version)
- Sight Unseen prod. by Bill Stevenson & Jason Livermore
- Six Ways 'Til Sunday prod. by Mass Giorgini
- Sliver
- Sometimes Selling Out Is Giving Out
- Sometimes Selling Out Is Giving Up prod. by Mass Giorgini
- Sooner or Later prod. by Andrew Berlin, Bill Stevenson, Chris Beeble & Jason Livermore
- Sounds Like prod. by Andrew Berlin, Bill Stevenson, Chris Beeble & Jason Livermore
- Stained Glass and Marble prod. by Mass Giorgini
- State of the Union prod. by Garth Richardson
- State of the Union (live)
- State of the Union (Warped Tour 2006)
- Sudden Life prod. by Bill Stevenson & Jason Livermore
- Sudden Urge prod. by Andrew Berlin, Bill Stevenson, Chris Beeble & Jason Livermore
- Survive prod. by Bill Stevenson & Jason Livermore
- Survivor Guilt prod. by Bill Stevenson & Jason Livermore
- Swing Life Away prod. by Garth Richardson
- Swing Life Away by Vitamin String Quartet