- 11am prod. by Scott Litt
- 11am (XXIII) (Unreleased)
- 2nd Movement of the Odyssey
- 3rd Movement of the Odyssey
- 4th Movement of the Odyssey
- Absolution Calling prod. by Brandon Boyd & Mike Einziger
- A Certain Shade of Green prod. by Jim Wirt
- A Certain Shade of Green (Acoustic Version)
- A Certain Shade of Green (Instrumental)
- A Crow Left of the Murder prod. by Brendan O'Brien
- Admiration prod. by Brendan O'Brien
- Adolescents prod. by Brendan O'Brien
- Agoraphobia prod. by Brendan O'Brien
- Agoraphobia (Acoustic)
- A Kiss to Send Us Off prod. by Brendan O'Brien
- A Kiss to Send Us Off (Live in Chicago) prod. by Natalie Johns
- Anna Molly prod. by Brendan O'Brien
- Anything prod. by Ben Kenney, Brandon Boyd, Chris Kilmore, José Pasillas & Mike Einziger
- Aqueous Transmission prod. by Scott Litt
- Aqueous Transmission (XXIII) (Unreleased)