- Running prod. by Alan Moulder, Atticus Ross & Trent Reznor
- Running (Cold Cave Remix)
- Sanctified (Demo) prod. by Trent Reznor
- Sanctified (Lollapalooza 2013)
- Satellite (Hot Chip Remix)
- Screaming Slave prod. by Trent Reznor
- Self Destruction, Final prod. by Trent Reznor
- Self Destruction (Part Three) prod. by Flood & Trent Reznor
- Self Destruction, Part Two prod. by Trent Reznor
- Sin (Dub) prod. by John Fryer & Trent Reznor
- Sin (Live) prod. by Trent Reznor
- Sin (Long) prod. by John Fryer & Trent Reznor
- Sin (Short) prod. by John Fryer & Trent Reznor
- Slate (Intro) prod. by Trent Reznor
- Slipping Away prod. by Alan Moulder & Trent Reznor
- Something I Can Never Have (Beside You In Time) prod. by Trent Reznor
- Something I Can Never Have (Still) prod. by Trent Reznor
- Somewhat Damaged (Instrumental) prod. by Atticus Ross & Trent Reznor
- So Tired prod. by Atticus Ross & Trent Reznor
- Souffrir (Hurt) by ArtDéco prod. by ArtDéco